Publications

  1. Rahul Badhwar and Ganesh Bagler*, "A distance constrained synaptic plasticity model of C. elegans neuronal network", Physica A (Accepted, 2016). arXiv:1603.03867[q-bio.NC]
  2. Megha Singh, Rahul Badhwar and Ganesh Bagler*, "Graph theoretical biomarkers for schizophrenic brain functional networks", International Conference on Signal Processing and Communication (Accepted, 2016).
  3. Vandana Ravindran, V Sunitha and Ganesh Bagler*, "Controllability of human cancer signaling network-- Signaling as a paradigm for disease control through drug-gene interactions", International Conference on Signal Processing and Communication (Accepted, 2016).
  4. Shivalika Pathania*, Ganesh Bagler* and Paramvir Singh Ahuja, "Differential network analysis reveals evolutionary complexity in secondary metabolism of Rauvolfia serpentina over Catharanthus roseus", Frontiers in Plant Science, 7, 1229 (2016). Open Access Article
  5. Sneha Pande and Ganesh Bagler*, "A data and information driven discovery framework to bridge traditional and modern medicine", Advanced Techniques in Biology and Medicine, 3:141 (2015). Open Access
  6. Rahul Badhwar and Ganesh Bagler*, "Control of neuronal network in Caenorhabditis elegans", PLoS ONE, 10(9): e0139204 (2015). Open Access on PLoS ONE
  7. Anupam Jain^, Rakhi NK^, and Ganesh Bagler*, "Analysis of food pairing in regional cuisines of India", PLoS ONE, 10(10): e0139539 (2015). ^Equal contribution. Open Access on PLoS ONE
  8. Rakesh Kanji, Abhinav Sharma, Ganesh Bagler*, "Phenotypic side effects prediction by optimizing correlation with chemical and target profiles of drugs", Molecular Biosystems (Royal Society of Chemistry), 11, 2900-2906 (2015). Article Link
  9. Shivalika Pathania, SM Ramakrishnan, Vinay Randhawa, and Ganesh Bagler*, "SerpentinaDB: a database of plant-derived molecules of Rauvolfia serpentina", BMC Complementary and Alternative Medicine, 15(262) (2015). Article Link | Serpentina DB (Now ported to IIIT-Delhi Servers)
  10. Shivalika Pathania, SM Ramakrishnan, Ganesh Bagler*, "Phytochemica: A platform to explore phytochemicals of medicinal plants", Database (Oxford University Press) (accepted, July 2015). Article Link | Pytochemica (Now ported to IIIT-Delhi Servers)
  11. K. Dubey et. al., "Tyrosine and tryptophan coated gold nanoparticles inhibit amyloid aggregation of insulin", Amino Acids, (21 July 2015). Journal Link
  12. S. Perumal et. al., "Capsaicin suppresses fibril formation of type I collagen and increases tendon's stability", European Biophysical Journal, 44(1-2) (2015). Journal Link
  13. Vivek Dogra, Ganesh Bagler* and Y Sreenivasulu*, "Re-analysis of protein data reveals the germination pathway and up accumulation mechanism of cell wall hydrolases during the radicle protrusion step of seed germination in Podophyllum hexandrum- a high altitude plant", Frontiers in Plant Science, 6, 874 (2015). Open Access Article
  14. Reena Yadav, Mayur Ghatge, Kirankumar Hiremath and Ganesh Bagler*, "Numerical study of variable lung ventilation strategies", Chapter 26, pp 299-306, Systems Thinking Approach for Social Problems, Lecture Notes in Electrical Engineering (2013). arXiv:1509.05163[q-bio.QM]
  15. Shivalika Pathania, Vinay Randhawa, and Ganesh Bagler*, "Prospecting for novel plant-derived molecules of Rauvolfia serpentina as inhibitors of Aldose Reductase, a potent drug target for diabetes and its complications", PLoS ONE, 8(4): e61327 (2013). arXiv | Open Access on PLoS ONE | Manuscript PDF | Supplementary Table: R. serpentina PDMs Dataset
  16. Vinay Randhawa, Purnima Sharma, Shashi Bhushan and Ganesh Bagler*, "Identification of key nodes of Type 2 Diabetes Mellitus protein interactome and study of their interactions with phloridzin", OMICS: A Journal of Integrative Biology, 17(6), 302-317 (June 2013). OMICS: Journal Link | Manuscript PDF | Supplementary Data PDF
  17. Shikha Vashisht and Ganesh Bagler*, "An approach for the identification of targets specific to bone metastasis using cancer genes interactome and gene ontology analysis", PLoS ONE, 7(11): e49401 (2012). arXiv:1112.1510v2 | Open Access on PLoS ONE | Manuscript PDF
  18. Vinay Randhawa and Ganesh Bagler*, "Identification of SRC as a potent drug target and its novel leads, for Asthma, using integrative approach of protein interactome analysis and in silico drug discovery", OMICS: A Journal of Integrative Biology, 16 (10), 512-526 (26 Sept 2012) OMICS: Journal Link | Manuscript PDF | Supplementary Data PDF
  19. Arun Kumar, Som Dutt, Ganesh Bagler, Paramvir Singh Ahuja, Sanjay Kumar, "Engineering a thermo-stable superoxide dismutase functional at sub-zero to >50 degree celcius, which also tolerates autoclaving", Scientific Reports (Nature Publishing Group), 2, 387, 1-8 (30 April 2012). DOI:10.1038/srep00387; Manuscript PDF | Supplementary Data PDF | Open Access: http://www.nature.com/srep/2012/120430/srep00387/full/srep00387.html
  20. Ganesh Bagler*, "Complex Network Models of Protein Structures -- Structural correlates of biophysical properties", Lambert Academic Publishing (Germany), ISBN: 978-3-8433-5860-6 (2010; BOOK).
  21. Michael Lappe, Ganesh Bagler, Ioannis Fillipis, Henning Stehr, Jose M Duarte, and Sathyapriya Rajagopal, "Designing evolvable libraries using multi-body potentials", Current Opinion in Biotechnology, (COVER-PAGE ARTICLE), 20, 437-446 (2009). Manuscript PDF
  22. Ganesh Bagler and Somdatta Sinha, "Assortative mixing in protein Contact Networks and protein folding kinetics", Bioinformatics, 23, 14, 1760-1767 (2007). Bioinformatics | PDF | arxiv.org/abs/0711.2723
  23. Ganesh Bagler* and Somdatta Sinha, "Network properties of protein Structures", Physica A, 346, 27-33 (2005). Physica A | arXiv:q-bio.MN/0408009
  24. Ganesh Bagler*, "Analysis of Airport Network of India as a Complex Weighted Network", Physica A, 387, Issue 12, 2972-2980 (2008). Physica A | arXiv:cond-mat/0409773
  25. Ganesh Bagler*, "Complex network view of performance and risks on airport networks", Nova Science Publishers, USA, ISBN: 978-1-60692-393-1 (2009). arxiv.org/abs/0805.0924
  26. Ganesh Bagler*, "Modeling Protein Contact Networks" | PhD Thesis (December 2006). arxiv.org/abs/0711.2616
  27. Ganesh Bagler and Somdatta Sinha, "The Role of Host Migration on Host-Parasite Population Dynamics", in Proceedings of the Second Conference on Nonlinear Systems and Dynamics, 37-40 (2005). PDF
  28. Hemant Dixit, Ganesh Bagler, and Somdatta Sinha, "Modelling the Host-Parasite Interaction", in Proceedings of the First Conference on Nonlinear Systems and Dynamics, 321-324 (2003). PDF
  29. Ganesh Bagler, Wei-chao Chen, Jia-xin Cui, Sutirth Dey, W. Tyler Gibson, Vuk Milosevic, Daniel Rosenbloom, and Jiang Zhang (in alphabetical order), "Non-verbal human communication under varying levels of restrictions: An empirical and computational investigation of Password and Gasekitomu games," SFI CSSS Student Papers, Beijing (2005). PDF
  30. Samraat Pawar, Oskar Burger, Brian Hallmark, Ganesh Bagler, Frank Wang, and Xue Fu, "Evolution of Food-web Networks in Fluctuating Environments," SFI CSSS Student Papers, Beijing (2005). PDF